GLIMMER MG MANUAL
About Glimmer-MG - University Of Maryland
About Glimmer-MG Glimmer-MG is a system for finding genes in environmental shotgun DNA sequences. Glimmer-MG (Gene Locator and Interpolated Markov ModelER - MetaGenomics) uses interpolated Markov models (IMMs) to identify the coding regions and [PDF]
Glimmer-MG ReleaseNotes Version0 - CBCB
5 Notes on Glimmer-MG programs 5.1 glimmer-mg This is the main program that makes gene predictions. 5.1.1 glimmer-mg Parameters & Options The invocation for glimmer-mg is: glimmer-mg [options ] sequence tag where sequence is the name of the le containing the DNA sequence(s) to be analyzed and tag is a pre x used to name the output les.Author: David R. Kelley, Art L. DelcherPublish Year: 2011
Glimmer-MG - omicX - omictools
Glimmer-MG is a metagenomics gene prediction system that implements a metagenomics pipeline incorporating classification and clustering of the sequences prior to gene prediction. The software predicts insertion, deletion and stop codon-introducing substitution errors in order to more closely track coding frames in raw error-prone sequences.Interface: Command line interfaceRestrictions to use: NoneName: Glimmer-MGUnique identifier: OMICS_01487
GitHub - davek44/Glimmer-MG: Gene prediction in
Finally, Glimmer-MG can predict insertions and deletions in the sequence by branching into a different frame at low quality base calls such as homopolymer runs in 454 sequences. See manual for instructions on installation and running Glimmer-MG.
Glimmer-MG/README at master · davek44/Glimmer-MG · GitHub
Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering - davek44/Glimmer-MG. Skip to content. See manual for instructions on installation and running Glimmer-MG. Reference: Kelley DR, Liu B, Delcher A, Pop M, Salzberg S.
GLIMMER - Official Site
ccb›SoftwareAbout Glimmer. Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. Glimmer (Gene Locator and Interpolated Markov ModelER) uses interpolated Markov models (IMMs) to identify the coding regions and
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Glimmer ReleaseNotes Version3 - ccb
Glimmer is a collection of programs for identifying genes in microbial DNA sequences. The system works by creating a variable-length Markov model from a training set of genes and then using that model to attempt to identify all genes in a given DNA sequence.
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Glimmer | Red Giant
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